1 材料与方法
1.1 材料
1.2 方法
表1 木薯水杨酸、茉莉酸信号途径基因表达量qPCR分析引物信息Tab. 1 Primer information of qPCR analysis of cassava salicylic acid and jasmonic acid signaling pathway gene expression |
| 基因类别 Gene type | 基因名称 Gene name | 基因号 Gene ID | 引物序列(5°-3°) Primer sequence (5°-3°) | 温度 Tm/℃ | 产物大小 Product size/bp |
|---|---|---|---|---|---|
| 水杨酸信号途径基因 | PAL2 | MANES_07G098700 | F:AGAGAGCTCATCAGGTTCTTG | 53.9 | 190 |
| R:ACATGGGGTGATGTTGTTGTTG | 55.8 | ||||
| 4CL3 | MANES_09G127000 | F:TGCTGTTGTCCCGCAAAAAG | 56.7 | 216 | |
| R:GCCAGCTTGGCTTTGATGTC | 57.6 | ||||
| WRKY7 | MANES_05G176800 | F:TTAACAGGGGAAACCGACAG | 54.6 | 163 | |
| R:AAGAGGAACCGCACTTGAGA | 56.1 | ||||
| NPR3 | MANES_14G155900 | F:ACCTGGAAAACAGAGTGGCA | 56.7 | 77 | |
| R:AGCATGTGCGATATCCCTGG | 57.7 | ||||
| 茉莉酸信号途径基因 | JAR1 | MANES_05G025500 | F:TCATCTACTACGCCCAAGTTTAAGA | 58.4 | 118 |
| R:CCATCTCAGCGCCCTTTGTA | 58.5 | ||||
| LOX2 | MANES_10G148800 | F:GCCATGGAAACACTTCTTGCT | 55.9 | 297 | |
| R:CTAGCCCCGTTTTGGGATCA | 57.6 | ||||
| OPR11 | MANES_18G120300 | F:GTTCACACCTCCAAGGCGA | 56.9 | 103 | |
| R:AACTCCATCAAACCCAGCTT | 58.0 | ||||
| 内参基因 | Tub | MANES_18G123607 | F:ATGTTGAGTTCAATATGCAGATCC | 58.1 | 154 |
| R:CCCAGAACTTGGCTCCGATT | 61.7 |
1.3 数据处理
2 结果与分析
2.1 二斑叶螨为害后转录组差异分析
表2 转录组数据产出质量评估表Tab. 2 Quality evaluation of transcriptome data output |
| 样品名 Sample name | 原始测序数据Raw reads | 过滤的数据 Clean reads | 过滤的碱基 Clean bases | Q30碱基百分比 Q30 base percentage/% | GC含量 GC content/% | 总体映射(占比) Total mapped (Percentage/%) |
|---|---|---|---|---|---|---|
| 抗-0d-1 | 9 158 864 | 9 075 399 | 0.45G | 97.03 | 43.43 | 8 270 745 (91.13) |
| 抗-0d-2 | 8 416 585 | 8 303 435 | 0.42G | 96.90 | 43.45 | 7 565 295 (91.11) |
| 抗-0d-3 | 9 274 111 | 9 184 437 | 0.46G | 96.97 | 45.12 | 8 371 538 (91.15) |
| 抗-1d-1 | 8 365 650 | 8 289 396 | 0.41G | 97.76 | 43.49 | 7 537 968 (90.94) |
| 抗-1d-2 | 8 022 944 | 7 591 327 | 0.38G | 93.77 | 43.00 | 6 797 283 (89.54) |
| 抗-1d-3 | 8 510 062 | 8 325 590 | 0.42G | 96.91 | 42.94 | 7 466 261 (89.68) |
| 抗-8d-1 | 6 331 530 | 6 170 882 | 0.30G | 93.62 | 43.94 | 5 492 702 (89.01) |
| 抗-8d-2 | 6 406 610 | 6 263 472 | 0.31G | 93.84 | 42.57 | 5 600 715 (89.42) |
| 抗-8d-3 | 6 940 368 | 6 482 502 | 0.32G | 93.75 | 43.74 | 5 729 021 (88.38) |
| 感-0d-1 | 9 329 966 | 8 850 070 | 0.44G | 97.76 | 43.78 | 7 965 958 (90.01) |
| 感-0d-2 | 6 706 724 | 6 475 586 | 0.32G | 93.82 | 43.11 | 5 768 537 (89.08) |
| 感-0d-3 | 6 398 849 | 6 201 887 | 0.31G | 91.66 | 43.94 | 4 812 664 (78.64) |
| 感-1d-1 | 8 714 151 | 8 289 426 | 0.41G | 96.94 | 43.05 | 7 469 774 (90.11) |
| 感-1d-2 | 9 095 073 | 8 584 397 | 0.43G | 96.91 | 43.05 | 7 666 189 (89.30) |
| 感-1d-3 | 6 801 897 | 6 553 439 | 0.33G | 93.93 | 43.22 | 5 119 819 (78.12) |
| 感-8d-1 | 7 227 219 | 6 768 748 | 0.34G | 93.76 | 43.43 | 5 977 438 (88.31) |
| 感-8d-2 | 10 069 575 | 9 816 740 | 0.49G | 96.97 | 41.42 | 8 672 946 (88.35) |
| 感-8d-3 | 7 879 163 | 7 768 360 | 0.39G | 96.85 | 41.30 | 6 782 986 (89.32) |
图1 用于转录组测序分析的抗、感螨参照标准木薯品种及螨害症状Fig. 1 Standard mite-resistant and mite-susceptible cassava cultivars used for transcriptome sequencing and the symptoms caused by mite infestation |
图2 二斑叶螨为害后抗、感螨木薯品种差异表达基因火山图Fig. 2 Volcano plot of differentially expressed genes of mite-resistant and mite-susceptible cassava cultivars |
图4 二斑叶螨为害后抗、感螨木薯品种差异表达基因GO功能注释分类统计图Fig. 4 GO functional annotation of differentially expressed genes of mite-resistant and mite-susceptible cassava cultivars infested by T. urticae |
2.2 抗、感螨木薯品种被二斑叶螨为害后差异表达基因的qPCR验证
表2 用于木薯水杨酸、茉莉酸信号途径qPCR验证的基因Tab. 2 Genes used for qPCR verification of salicylic acid and jasmonic acid signaling pathway in cassava |
| 序号 No. | 害虫 Pest | 植物 Plant | 基因名称Gene name | 基因功能 Gene function | 参考文献 References | 转录组分析差异表达情况 C1115 (R) vs BRA900 (S) Difference of gene expression as analyzed by transcriptome C1115 (R) vs BRA900 (S) |
|---|---|---|---|---|---|---|
| 1 | 二斑叶螨 | 番茄 | PAL | 启动或加强苯丙烷类代谢,刺激木质素积累 | [23] | 1 d上调,8 d上调 |
| 2 | 茶小绿叶蝉 | 茶树 | 4CL | 促进防御次生代谢物合成,刺激木质素积累 | [24] | 1 d上调,8 d下调 |
| 3 | 大豆蚜 | 大豆 | WRKY7 | 转录调控激活水杨酸途径 | [25] | 1 d上调,8 d下调 |
| 4 | 烟草天蛾 | 烟草 | NPR | 调节水杨酸诱导的免疫反应 | [26] | 1 d上调,8 d下调 |
| 5 | 根结线虫 | 拟南芥 | JAR1 | 催化茉莉酸-氨基酸缀合物合成 | [27] | 1 d上调,8 d上调 |
| 6 | 桃蚜 | 辣椒 | LOX | 植物间诱导防御通讯信号物质,调控茉莉酸合成 | [28] | 1 d上调,8 d上调 |
| 7 | 烟粉虱 | 辣椒 | OPR | 植物防御反应还原性蛋白 | [29] | 1 d上调,8 d上调 |
图6 二斑叶螨为害前后水杨酸途径基因在抗、感木薯品种中的相对表达量A:C1115;B:BRA900;C:C1115 vs BRA900;不同小写字母表示同一基因的表达量具有显著差异(P<0.05)。 Fig. 6 Changes of salicylic acid pathway gene transcription levels in mite-resistant and mite-susceptible cassava cultivars A: C1115; B: BRA900; C: C1115 vs BRA900; Different lowercase letters indicate significant difference of transcription of identical gene (P<0.05). |
图7 二斑叶螨为害前后茉莉酸途径基因在抗、感木薯品种中的相对表达量A:C1115;B:BRA900;C:C1115 vs BRA900;不同小写字母表示同一基因的表达量具有显著差异(P<0.05)。 Fig. 7 Changes of jasmonic acid pathway gene transcription levels in mite-resistant and mite-susceptible cassava cultivars A: C1115; B: BRA900; C: C1115 vs BRA900; Different lowercase letters indicate significant difference of transcription of identical gene (P<0.05). |
