The effect of regeneration population on the genetic integrity of sesame germplasm was studied to determine the appropriate population size and provide theoretical references for germplasm renewal and reproduction.The genetic parameters of two different types of sesame germplasm including released cultivar and local germplasm were analyzed using SRAP markers. (1) Released cultivar: Seven gradients of population size including 10, 15, 20, 25, 30, 35 and 40 were selected randomly. 24 pairs of primers were co-amplified to 525 loci, with an average of 21.88 loci per primer pairs, including 24 polymorphic loci, accounting for 4.57% of the total locus. With the increase of population size, the total amplification loci and genetic similarity coefficient increased, and the ratio of polymorphic loci and genetic distance increased and then decreased. When the population size reached 35-40 plants, the genetic similarity coefficient reached a certain high value (0.998 73 and 1.000 00), and the genetic distance decreased to a certain degree (0.000 64 and 0.000 00). The clustering results showed that the populations with 35 and 40 were closely clustered. So the genetic integrity could be maintained when the population size of released cultivar reached 35-40. (2) Local germplasm: Eleven gradients of population size including 10, 15, 20, 25, 30, 35, 40, 45, 50, 55 and 60 were selected randomly. 24 pairs of primers were co-amplified to 552 DNA locus, with an average of 23.00 locus per primer pairs, and including 44 polymorphic loci, accounting for 7.97% of the total loci. With the increase of population size, the total amplification loci fluctuation increased, and the ratio of polymorphic loci and genetic distance first increased, then decreased and then slightly changed. With the increase of population size, the genetic similarity coefficient first decreased, then increased, then slightly decreased and then rose again, and reached the maximum value of 0.99758 when the population size was 40 and 60 plants. The clustering results showed that the populations of 50, 55 and 60 plants were closely clustered. So it could be considered that the genetic integrity of local germplasm could be maintained when the reproductive population reached 50-55 plants. (3) In the regenerating of sesame germplasm, different germplasm types should have different population size to maintain the genetic integrity because of the different genetic purity.