Transcriptome Data Analysis of <i>Artocarpus heterophyllus </i>Stems and Leaves
Welcome to Chinese Journal of Tropical Crops,

Chinese Journal of Tropical Crops ›› 2020, Vol. 41 ›› Issue (7): 1288-1297.DOI: 10.3969/j.issn.1000-2561.2020.07.002

• Omics & Biotechnology • Previous Articles     Next Articles

Transcriptome Data Analysis of Artocarpus heterophyllus Stems and Leaves

PAN Min1,YU Xudong1,CAI Zeping1,*(),LI Jiajia1,LUO Jiajia2,3,ZHOU Dan1,CHU Wenqing1,QU Qian1   

  1. 1. College of Forestry, Hainan University / Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, Haikou, Hainan 570228, China
    2. College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
    3. Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rural Affatrs, Danzhou, Hainan 571737, China
  • Received:2019-09-09 Revised:2019-10-26 Online:2020-07-25 Published:2020-08-24
  • Contact: CAI Zeping

Abstract:

Artocarpus heterophyllus is an important woody plant in tropical regions withhigh economic value. This test used the normal and chlorophyll deficient mutant of A. heterophyllus seedlings as the research materials. The transcriptome of the stems and leaves was sequenced by PacBio Sequel, 95 701 isoformswerefinally found. After cluster and polish, using NR, NT, GO, KOG, KEGG, Swiss-Prot and InterPro 7 databases for functional annotation, a total of 93 367 transcripts were annotated. There were 92 187 (NR), 90 326 (NT), 74 548 (Swiss-Prot), 75 396 (KEGG), 77 022 (KOG), 81 906 (InterPro) and 65 500 (GO) transcripts annotated in the seven databases respectively. In addition, a total of 85 091 CDS and 55 608 SSR sequences were detected, 4 753 transcription factors, 1 667 transcriptional regulators and 4 710 receptor-like kinases were predicted.

Key words: Artocarpus heterophyllus, transcriptome, functional annotation

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