Chinese Journal of Tropical Crops ›› 2022, Vol. 43 ›› Issue (11): 2188-2198.DOI: 10.3969/j.issn.1000-2561.2022.11.002
• Special Topic of Natural Rubber • Previous Articles Next Articles
ZHANG Hongtao1,2, XIAO Xiaohu2, YANG Jianghua2, QIN Yunxia2, LONG Xiangyu2, YIN Hongyan1, FANG Yongjun2,*()
Received:
2022-06-07
Revised:
2022-07-14
Online:
2022-11-25
Published:
2022-12-12
Contact:
FANG Yongjun
About author:
*FANG Yongjun,E-mail:fangyj@foxmail.com。CLC Number:
ZHANG Hongtao, XIAO Xiaohu, YANG Jianghua, QIN Yunxia, LONG Xiangyu, YIN Hongyan, FANG Yongjun. Identification and Expression Analysis of YABBY Gene Family in Hevea brasiliensis[J]. Chinese Journal of Tropical Crops, 2022, 43(11): 2188-2198.
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引物名称 Primer name | 正向引物(5'-3') Forward primer (5'-3') | 反向引物(5'-3') Reverse primer (5'-3') |
---|---|---|
HbYAB1a | AATTGGGCACACTTCCCACA | AGTAGGGCATATTGGCAGGA |
HbYAB1b | AGGACGAGATCCAACGCATC | CTTCACGGGTTGATCAGGCAT |
HbYAB1c | GCTTCCAAGGCCACCAGTTA | GATGCGTTGGATCTCGTCCT |
HbYAB1d | TGTTCTCGCGGTGAGTGTTC | GTTGACTGGGAGGAGGTTGG |
HbYAB2a | AGCGGTTAGTGTTCCAAGCA | TGCCATGTTCACAGACAGCA |
HbYAB5a | GCATTCAGTACTGCTGCCAA | AGCTTAGCTTGGCTGTTGGT |
HbYAB5b | ATTGGGCACATTACCCTCACA | ACATTAGGCGCTTCTCAGAGT |
HbCRC1 | TGCACTGCAACTTCTGCAAC | GTATTCTGTGGCAAAGCGCC |
18S rRNA | GCTCGAAGACGATCAGATACC | TTCAGCCTTGCGACCATAC |
Tab. 1 Primers for RT-qPCR used in this study
引物名称 Primer name | 正向引物(5'-3') Forward primer (5'-3') | 反向引物(5'-3') Reverse primer (5'-3') |
---|---|---|
HbYAB1a | AATTGGGCACACTTCCCACA | AGTAGGGCATATTGGCAGGA |
HbYAB1b | AGGACGAGATCCAACGCATC | CTTCACGGGTTGATCAGGCAT |
HbYAB1c | GCTTCCAAGGCCACCAGTTA | GATGCGTTGGATCTCGTCCT |
HbYAB1d | TGTTCTCGCGGTGAGTGTTC | GTTGACTGGGAGGAGGTTGG |
HbYAB2a | AGCGGTTAGTGTTCCAAGCA | TGCCATGTTCACAGACAGCA |
HbYAB5a | GCATTCAGTACTGCTGCCAA | AGCTTAGCTTGGCTGTTGGT |
HbYAB5b | ATTGGGCACATTACCCTCACA | ACATTAGGCGCTTCTCAGAGT |
HbCRC1 | TGCACTGCAACTTCTGCAAC | GTATTCTGTGGCAAAGCGCC |
18S rRNA | GCTCGAAGACGATCAGATACC | TTCAGCCTTGCGACCATAC |
基因名称 Gene name | 内含子数量 Intron number | 染色体位置 Chromosome location | 蛋白长度 Protein length | 分子量 Molecular weight/kDa | 等电点 Isoelectric point | 总平均疏水性 Grand average of hydropathicity | 亚细胞定位预测 Subcellular prediction |
---|---|---|---|---|---|---|---|
HbYAB1a | 6 | 14:77655721-77658635 | 210 | 23.40 | 7.11 | -0.385 | 细胞核 |
HbYAB1b | 6 | 3:1493601-1496402 | 212 | 23.55 | 8.24 | -0.356 | 细胞核 |
HbYAB1c | 5 | 9:5017029-5019287 | 212 | 23.65 | 7.72 | -0.314 | 细胞核 |
HbYAB1d | 6 | 14:51863113-51865926 | 241 | 27.67 | 8.41 | 0.153 | 细胞核 |
HbYAB2a | 5 | 5:21117206-21124072 | 140 | 15.71 | 7.94 | -0.934 | 细胞核 |
HbYAB2b | 5 | 7:30876105-30882716 | 141 | 15.80 | 8.91 | -0.929 | 细胞核 |
HbYAB4a | 6 | 8:84932389-84934071 | 233 | 26.41 | 6.25 | -0.446 | 细胞核 |
HbYAB5a | 6 | 18:19023792-19027425 | 185 | 20.78 | 8.42 | -0.384 | 细胞核 |
HbYAB5b | 6 | 15:35834955-35838856 | 132 | 14.75 | 8.13 | -0.161 | 细胞核 |
HbCRC1 | 5 | 1:6603668-6608074 | 227 | 25.46 | 9.06 | -0.296 | 细胞核 |
HbCRC2 | 6 | 14:5322493-5324935 | 188 | 20.95 | 9.38 | -0.339 | 细胞核 |
Tab. 2 Physicochemical properties of HbYABBYs
基因名称 Gene name | 内含子数量 Intron number | 染色体位置 Chromosome location | 蛋白长度 Protein length | 分子量 Molecular weight/kDa | 等电点 Isoelectric point | 总平均疏水性 Grand average of hydropathicity | 亚细胞定位预测 Subcellular prediction |
---|---|---|---|---|---|---|---|
HbYAB1a | 6 | 14:77655721-77658635 | 210 | 23.40 | 7.11 | -0.385 | 细胞核 |
HbYAB1b | 6 | 3:1493601-1496402 | 212 | 23.55 | 8.24 | -0.356 | 细胞核 |
HbYAB1c | 5 | 9:5017029-5019287 | 212 | 23.65 | 7.72 | -0.314 | 细胞核 |
HbYAB1d | 6 | 14:51863113-51865926 | 241 | 27.67 | 8.41 | 0.153 | 细胞核 |
HbYAB2a | 5 | 5:21117206-21124072 | 140 | 15.71 | 7.94 | -0.934 | 细胞核 |
HbYAB2b | 5 | 7:30876105-30882716 | 141 | 15.80 | 8.91 | -0.929 | 细胞核 |
HbYAB4a | 6 | 8:84932389-84934071 | 233 | 26.41 | 6.25 | -0.446 | 细胞核 |
HbYAB5a | 6 | 18:19023792-19027425 | 185 | 20.78 | 8.42 | -0.384 | 细胞核 |
HbYAB5b | 6 | 15:35834955-35838856 | 132 | 14.75 | 8.13 | -0.161 | 细胞核 |
HbCRC1 | 5 | 1:6603668-6608074 | 227 | 25.46 | 9.06 | -0.296 | 细胞核 |
HbCRC2 | 6 | 14:5322493-5324935 | 188 | 20.95 | 9.38 | -0.339 | 细胞核 |
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