Chinese Journal of Tropical Crops ›› 2019, Vol. 40 ›› Issue (1): 199-207.DOI: 10.3969/j.issn.1000-2561.2019.01.029
• Reviews • Previous Articles
SHI Peng,WANG Yong,JIN Longfei,ZHANG Dapeng,ZHAO Zhihao,CAO Hongxing,LEI Xintao()
Received:
2018-07-13
Revised:
2018-09-04
Online:
2019-01-15
Published:
2019-01-15
Contact:
LEI Xintao
SHI Peng,WANG Yong,JIN Longfei,ZHANG Dapeng,ZHAO Zhihao,CAO Hongxing,LEI Xintao. Research Progress on DNA Methylation During Plant Tissue Culture[J]. Chinese Journal of Tropical Crops, 2019, 40(1): 199-207.
Add to citation manager EndNote|Ris|BibTeX
URL: http://www.rdzwxb.com/EN/10.3969/j.issn.1000-2561.2019.01.029
[1] |
梁称福 . 植物组织培养研究进展与应用概况[J]. 经济林研究, 2005,23(4):99-105.
DOI URL |
[2] |
Shen-Miller J, Sharp W R . An improved medium for rapid initiation of Arabidopsis tissue culture from seed[J]. Bulletin of the Torrey Botanical Club, 1966,93(1):68-69.
DOI URL |
[3] |
Ge X, Chu Z, Lin Y , et al. A tissue culture system for different germplasms of indica rice[J]. Plant Cell Reports, 2006,25(5):392-402.
DOI URL PMID |
[4] | Jones T J . Maize tissue culture and transformation: The first 20 years[M] //Molecular Genetic Approaches to Maize Improvement. Springer Berlin Heidelberg, 2009: 7-27. |
[5] | Kang J M . Establishment of tissue culture system of Chinese poplars: Populus tomentosa and Populus alba cv. Pyramidalis × Populus tomentosa[J]. Bulletin of the Tokyo University Forests, 1992,88:127-133. |
[6] | Alwee S S, Roowi S H, Teng A K, et al. Progress of oil palm tissue culture in Felda and its challenges [C]//ISOPB, 2010. |
[7] |
Nguyen Q T ,Bandupriya H D D, López-Villalobos A , et al. Tissue culture and associated biotechnological interventions for the improvement of coconut (Cocos nucifera, L.): a review[J]. Planta, 2015,242(5):1-18.
DOI URL PMID |
[8] | 丰先红, 李健, 罗孝贵 . 植物组织培养中体细胞无性系变异研究[J]. 中国农学通报, 2010,26(14):70-73. |
[9] | 张迪 . 组织培养诱导水稻发生的可遗传基因组变异及非生物胁迫下表型变异的研究[D]. 长春: 东北师范大学, 2015. |
[10] |
Ongabdullah M, Ordway J M, Jiang N , et al. Loss of karma transposon methylation underlies the mantled somaclonal variant of oil palm[J]. Nature, 2015,525(7570):533-537.
DOI URL PMID |
[11] |
Stroud H, Bo D, Simon S A , et al. Plants regenerated from tissue culture contain stable epigenome changes in rice[J]. Elife, 2013,2(2):e00354.
DOI URL PMID |
[12] |
Xu L, Huang H . Genetic and epigenetic controls of plant regeneration[J]. Current Topics in Developmental Biology, 2014,108:1-33.
DOI URL PMID |
[13] |
Stelpflug S C, Eichten S R, Hermanson P J , et al. Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize[J]. Genetics, 2014,198(1):209-218.
DOI URL PMID |
[14] | Chen M, Lv S, Meng Y . Epigenetic performers in plants[J]. Development Growth & Differentiation, 2010,52(6):555-566. |
[15] |
Lee K, Seo P J . Dynamic epigenetic changes during plant regeneration[J]. Trends in Plant Science, 2018,23(3):235-247.
DOI URL |
[16] |
Bewick A J, Schmitz R J . Gene body DNA methylation in plants[J]. Current Opinion in Plant Biology, 2017,36:103-110.
DOI URL PMID |
[17] |
Cokus S J, Feng S, Zhang X , et al. Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning[J]. Nature, 2008,452(7184):215-219.
DOI URL PMID |
[18] |
Zhang H M, Lang Z B, Zhu J K . Dynamics and function of DNA methylation in plants[J]. Nature Reviews Molecular Cell Biology, 2018,19:489-506.
DOI URL PMID |
[19] | Law J A, Jacobsen S E . Establishing, maintaining and modifying DNA methylation patterns in plants and animals[J]. Nature Reviews Genetics, 2010,11(3):204-220. |
[20] |
He X J, Chen T, Zhu J K . Regulation and function of DNA methylation in plants and animals[J]. Cell Research, 2011,21(3):442-465.
DOI URL PMID |
[21] | Kankel M W, Ramsey D E, Stokes T L , et al. Arabidopsis MET1 cytosine methyltransferase mutants[J]. Genetics, 2003,163(3):1109-1122. |
[22] |
Bartee L, Malagnac F, Bender J . Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene[J]. Genes & Development, 2001,15(14):1753-1758.
DOI URL PMID |
[23] | Cao X, Aufsatz W, Zilberman D , et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation[J]. Current Biology, 2002,13(24):2212-2217. |
[24] | Gong Z, Morales-Ruiz T, Ariza R R , et al. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase[J]. Cell, 2002,111(6):803-814. |
[25] | Choi Y, Gehring M, Johnson L , et al. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis[J]. Cell, 110(1):33-42. |
[26] | Moralesruiz T, Ortegagalisteo A P, Ponferradamarín M I , et al. DEMETER and REPRESSOR of SILENCING 1 encode 5-methylcytosine DNA glycosylases[J]. Proceedings of the National Academy of Sciences of the United States of America, 2006,103(18):6853-6858. |
[27] |
Ortega-Galisteo A P, Morales-Ruiz T, Ariza R R , et al. Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks[J]. Plant Molecular Biology, 2008,67(6):671-681.
DOI URL PMID |
[28] | Wang Y, Rong H, Xie T , et al. Comparison of DNA methylation in the developing seeds of yellow- and black-seeded Brassica napus through MSAP analysis[J]. Euphytica, 2016,209(1):157-169. |
[29] |
Matthes M , Cheah S K A, Singh R . Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes[J]. Theoretical & Applied Genetics, 2001,102(6-7):971-979.
DOI URL |
[30] | 吕晓婷 . 苹果愈伤组织形成过程中DNA甲基化的研究[D]. 青岛: 青岛农业大学, 2012. |
[31] | 骆薇 . 转基因白桦微繁过程中DNA甲基化的变异机制[D]. 哈尔滨: 东北林业大学, 2011. |
[32] |
Vining K, Pomraning K R, Wilhelm L J , et al. Methylome reorganization during in vitro, dedifferentiation and regeneration of Populus trichocarpa[J]. BMC Plant Biology, 2013,13:92.
DOI URL PMID |
[33] |
Xu J, Wang X, Cao H , et al. Dynamic changes in methylome and transcriptome patterns in response to methyltransferase inhibitor 5-azacytidine treatment in citrus[J]. DNA Research, 2017,24(5):509-522.
DOI URL PMID |
[34] |
Han Z, Crisp P A, Stelpflug S , et al. Heritable epigenomic changes to the maize methylome resulting from tissue culture[J]. Genetics, 2018,209(4):983-995.
DOI URL PMID |
[35] |
Liu H, Ma L, Yang X , et al. Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation[J]. BMC Plant Biology, 2017,17:105.
DOI URL PMID |
[36] |
Rival A, Ilbert P, Labeyrie A , et al. Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures[J]. Plant Cell Reports, 2013,32(3):359-368.
DOI URL PMID |
[37] |
Orłowska R, Machczyńska J, Oleszczuk S , et al. DNA methylation changes and TE activity induced in tissue cultures of barley (Hordeum vulgare L.)[J]. Journal of Biological Research-Thessaloniki, 2016,23:19.
DOI URL PMID |
[38] |
Temel A, Gozukirmizi N . Analysis of retrotransposition and DNA methylation in barley callus culture[J]. Acta Biologica Hungarica, 2013,64(1):86-95.
DOI URL PMID |
[39] | 韩柏明, 赵恺, 李贺 , 等. 组织培养导致的草莓DNA甲基化变异[J]. 植物生理学报, 2010,46(8):797-802. |
[40] |
Kubis S E , Castilho A M M F, Vershinin A V . Retroelements, transposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation[J]. Plant Molecular Biology, 2003,52(1):69-79.
DOI URL PMID |
[41] |
Machczyńska J, Orłowska R, Mańkowski D R , et al. DNA methylation changes in triticale due to in vitro culture plant regeneration and consecutive reproduction[J]. Plant Cell Tissue & Organ Culture, 2014,119(2):289-299.
DOI URL |
[42] | 孟海军 . 柑橘胚胎发生过程中DNA甲基化/去甲基化研究及SSR标记开发[D]. 武汉: 华中农业大学, 2006. |
[43] | 丁明丽 . 小麦成熟胚脱分化过程的DNA甲基化研究[D]. 郑州: 河南农业大学, 2008. |
[44] |
Zakrzewski F, Schmidt M, Lijsebettens M V , et al. DNA methylation of retrotransposons, DNA transposons and genes in sugar beet (Beta vulgaris L.)[J]. Plant Journal for Cell & Molecular Biology, 2017,90(6):1156-1175.
DOI URL PMID |
[45] | 张剑锋 . 利用DNA分子标记检测组织培养诱导水稻DNA甲基化变异[D]. 长春: 东北师范大学, 2006. |
[46] |
Temel A, Gozukirmizi N . Effects of homobrassinolide in barley callus culture[J]. Plant Soil & Environment, 2012,58(58):441-445.
DOI URL |
[47] | 刘鹏飞, 乔光, 文晓鹏 . 火龙果组培苗DNA甲基化变化及应答赤霉素效应[J]. 华中农业大学学报, 2016,35(5):18-26. |
[48] | 聂丽娟, 王子成, 何艳霞 . 菊花组织培养继代过程中的DNA甲基化变化[J]. 园艺学报, 2008,35(11):1689-1694. |
[49] |
Ghosh A, Igamberdiev A U, Debnath S C . Detection of DNA methylation pattern in thidiazuron-induced blueberry callus using methylation-sensitive amplification polymorphism[J]. Biologia Plantarum, 2016,61(3):511-519.
DOI URL |
[50] | Bardini M, Labra M, Winfield M , et al. Antibiotic-induced DNA methylation changes in calluses of Arabidopsis thaliana[J]. Plant Cell Tissue & Organ Culture, 2003,72(2):157-162. |
[51] |
Horstman A, Li M, Heidmann I , et al. The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis[J]. Plant Physiology, 2017,175(2):848-857.
DOI URL PMID |
[52] |
Li X, Han J D, Fang Y H , et al. Expression analyses of embryogenesis-associated genes during somatic embryogenesis of Adiantum capillus-veneris L. in vitro: new insights into the evolution of reproductive organs in land plants[J]. Frontiers in Plant Science, 2017,8:658.
DOI URL PMID |
[53] |
Ho W K, Ooi S E, Mayes S , et al. Methylation levels of a novel genetic element, EgNB3 as a candidate biomarker associated with the embryogenic competency of oil palm[J]. Tree Genetics & Genomes, 2013,9(4):1099-1107.
DOI URL |
[54] |
Gao Y, Ran L, Kong Y , et al. Assessment of DNA methylation changes in tissue culture of Brassica napus[J]. Genetika, 2014,50(11):1338-1344.
DOI URL PMID |
[55] | Santos D, Fevereiro P . Loss of DNA methylation affects somatic embryogenesis in Medicago truncatula[J]. Plant Cell Tissue & Organ Culture, 2002,70(2):155-161. |
[56] |
Wang X, Wu R, Lin X , et al. Tissue culture-induced genetic and epigenetic alterations in rice pure-lines, F1 hybrids and polyploids[J]. BMC Plant Biology, 2013,13:77.
DOI URL PMID |
[57] | Su Y H, Zhao X Y, Liu Y B , et al. Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis[J]. Plant Journal, 2009,59(3):448-460. |
[58] |
Li W, Liu H, Cheng Z J , et al. DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling[J]. PLoS Genetics, 2011,7(8):e1002243.
DOI URL PMID |
[59] |
Mahdavi-Darvari F, Noor N M, Ismanizan I . Epigenetic regulation and gene markers as signals of early somatic embryogenesis[J]. Plant Cell Tissue & Organ Culture, 2015,120(2):407-422.
DOI URL |
[60] |
Shemer O, Landau U, Candela H , et al. Competency for shoot regeneration from Arabidopsis root explants is regulated by DNA methylation[J]. Plant Science, 2015,238:251-261.
DOI URL PMID |
[61] |
Liu H, Zhang H, Dong Y X , et al. DNA METHYLTRANSFERASE1-mediated shoot regeneration is regulated by cytokinin-induced cell cycle in Arabidopsis[J]. New Phytologist, 2018,217(1):219-232.
DOI URL PMID |
[62] | Nic-Can G I, López-Torres A, Barredo-Pool F , et al . New insights into somatic embryogenesis: LEAFY COTYLEDON1, BABY BOOM1, and WUSCHEL-RELATED HOMEOBOX4, are epigenetically regulated in Coffea canephora[J]. PLoS ONE, 2013,8(8):e72160. |
[63] |
Yaish M W, Allawati A, Alharrasi I , et al. Genome-wide DNA methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)[J]. BMC Genomics, 2018,19:78.
DOI URL |
[64] |
Feng S J, Liu X S, Tao H , et al. Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium[J]. Plant Cell & Environment, 2016,39(12):2629-2649.
DOI URL PMID |
[65] |
Gallego-Bartolome J, Gardiner J, Liu W , et al. Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain[J]. Proceedings of the National Academy of Sciences of the United States of America, 2018,115(9):E2125-E2134.
DOI URL PMID |
[66] | Ji L, Jordan W T, Shi X , et al. TET-mediated epimutagenesis of the Arabidopsis thaliana methylome[J]. Nature Communications, 2018,9:895. |
[1] | DONG Na,LI Chengru,CHEN Lei,ZHAO Yamei,ZHUANG Qiurong,ZHAI Junwen,WU Shasha. Establishment and Application of Ornamental Evaluation System for Oxalis [J]. Chinese Journal of Tropical Crops, 2020, 41(9): 1770-1778. |
[2] | YOU Jianhua,LIANG Tian,FAN Baoning,WU Kaichao,TAN Hongwei,HUANG Rihong,JIA Zhaoxiong,CAI Yongming. Effects of Direct Replanting Seed Caneon Ratoon Sugarcane, a Case Study in Rongshui Miao Autonomous County, Guangxi in 2017 [J]. Chinese Journal of Tropical Crops, 2020, 41(9): 1790-1796. |
[3] | JIA Zechong,LIU Yunhao,CHEN Xia,WANG Hai,DENG Yajie,HU Xinwen,ZHOU Yang,PANG Zhenzhen,LAI Hanggui. Developmental Anatomy of Flower Apparatus of Male Sterile Plant of Camellia vietnamensis [J]. Chinese Journal of Tropical Crops, 2020, 41(9): 1808-1815. |
[4] | CHEN Heming,JIANG Nan,LYU Fubing,XIAO Wenfang,LI Zuo,ZHU Genfa. Tissue Culture Technology for Pedicel Shoots of Dendrobium kingianum Bidwill [J]. Chinese Journal of Tropical Crops, 2020, 41(8): 1529-1534. |
[5] | FAN Zhiwei,LI Xiaoxia,LIU Yan,XI Jingeng,WANG Ya,SHEN Yide,HUANG Qiaoqiao,YI Kexian. Weed Species, Distribution and Damage on Sisal Plantation and Its Strategy of Control [J]. Chinese Journal of Tropical Crops, 2020, 41(8): 1654-1664. |
[6] | DUAN Ruijun,HUANG Shengzhuo,WANG Jun,ZENG Jun,WANG Hao,DONG Wenhua,LI Wei,MEI Wenli,DAI Haofu. Investigation and Analysis of Vascular Plant Resources in Yongle Islands [J]. Chinese Journal of Tropical Crops, 2020, 41(8): 1714-1722. |
[7] | HUANG Xinyi,LU Zuzheng,BIN Zhenjun,GAN Chunlin,QIN Qian,DING Liqiong. Community Characteristics of Wild Plant Species with Extremely Small Populations Phalaenopsis lobbii [J]. Chinese Journal of Tropical Crops, 2020, 41(7): 1469-1476. |
[8] | WANG Qinglong,WANG Maoyuan,YANG Hubiao,YAN Xiaoxia,WANG Zhunian. Newly Recorded Plants of Angiosperm in Hainan (Ⅲ) [J]. Chinese Journal of Tropical Crops, 2020, 41(7): 1484-1489. |
[9] | DENG Cong,WU Zhixiang,TAN Zhenghong,LIAO Liguo,CUI Yibin,CHENG Juan,ZHAO Linlin. Variations of Canopy Temperature in a Rubber Plantation in Western Hainan Island and Their Relations with Micrometeorological Factors [J]. Chinese Journal of Tropical Crops, 2020, 41(7): 1490-1497. |
[10] | WANG Mengxin,WU Guohuo,CUI Lin,HAN Baoyu. Enzyme Activity Characteristics and Expression of Cu/Zn-SOD Gene in Tea Flowers [J]. Chinese Journal of Tropical Crops, 2020, 41(6): 1167-1173. |
[11] | MO Yuanqi,LI Hanwen,JIANG Nan,ZHENG Feng,FANG Lin,LI Lin,ZHOU Yiqing,WU Kunlin,ZENG Songjun. Tissue Culture and Rapid Propagation of Dendrobium Hibiki [J]. Chinese Journal of Tropical Crops, 2020, 41(6): 1179-1188. |
[12] | ZHOU Jinsong,WANG Chao,ZHI Jiazeng,DU Hao,LI Zongkai,GAO Mei,SUN Yinhu,ZHANG Guangyong,CHEN Weiqiang. Yield Change and Carbon Emission Reduction & Fixation Potential of Banana in Mountain Areas in Mode of Chemical Fertilize Reduction [J]. Chinese Journal of Tropical Crops, 2020, 41(6): 1257-1264. |
[13] | YUAN Huifang,HUANG Jing,TIAN Yaohua. Soil Physical and Hydrothermal Characteristics of Mountain Rubber Plantation under Different Management Modes [J]. Chinese Journal of Tropical Crops, 2020, 41(5): 1057-1063. |
[14] | ZHAO Qingyun,PU Haojie,WANG Qiujing,DONG Yunping,LIN Xingjun,SUN Yan,LONG Yuzhou. Nutrient Content of Coffee Peel with Different Composting Treatments and Its Effects on Coffee Plant Growth [J]. Chinese Journal of Tropical Crops, 2020, 41(4): 633-639. |
[15] | TIAN Qinglan,LIU Jieyun,WU Yanyan,HUANG Weihua,HUANG Yongcai,MOU Haifei,WU Daidong,ZHANG Yingjun,HUANG Pingming. Comparison of Yield Formation and Quality of ‘Zhongjiao No. 9 ’ under Different Transplanting Dates [J]. Chinese Journal of Tropical Crops, 2020, 41(4): 640-648. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||